PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009606766.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 236aa    MW: 27210.5 Da    PI: 8.5887
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009606766.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.94.1e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l+  ++++G ++W++ +r  g+ R++k+c++rw +yl
   XP_009606766.1 14 KGPWTAEEDQILISFIQRYGHENWRALPRQAGLLRCGKSCRLRWINYL 61
                     79******************************99************97 PP

2Myb_DNA-binding57.24e-1867112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++++eE+e ++++++ lG++ W++Ia++++ gRt++++k++w+++l
   XP_009606766.1  67 RGNFSEEEEETIIKLHQVLGNR-WSAIASRLP-GRTDNEIKNFWHTHL 112
                      89********************.*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-24564IPR009057Homeodomain-like
PROSITE profilePS5129416.047961IPR017930Myb domain
SuperFamilySSF466896.25E-3110108IPR009057Homeodomain-like
SMARTSM007177.6E-141363IPR001005SANT/Myb domain
PfamPF002492.3E-151461IPR001005SANT/Myb domain
CDDcd001677.61E-111661No hitNo description
PROSITE profilePS5129426.46562116IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.1E-2765115IPR009057Homeodomain-like
SMARTSM007171.4E-1766114IPR001005SANT/Myb domain
PfamPF002491.1E-1667112IPR001005SANT/Myb domain
CDDcd001671.28E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MVRAPCCERM GLKKGPWTAE EDQILISFIQ RYGHENWRAL PRQAGLLRCG KSCRLRWINY  60
LRPDIKRGNF SEEEEETIIK LHQVLGNRWS AIASRLPGRT DNEIKNFWHT HLKKRSEHNY  120
LLPSTTTTKR SSHDMMMIPK RTTNVSQKIN HHIISSNYQA SQNIVTYHPT CHVEDLQENN  180
SSSYSDTKSN KEESMQSING QNIGCESANG HGDTSFSNDM VFWYNIFMSA GTTSES
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-30121175109B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1127134TKRSSHDM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754443e-42HG975444.1 Solanum pennellii chromosome ch05, complete genome.
GenBankHG9755173e-42HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009606766.11e-180PREDICTED: myb-related protein Myb4-like
SwissprotQ7XBH42e-73MYB4_ORYSJ; Myb-related protein Myb4
TrEMBLM1C5C01e-112M1C5C0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000601681e-111(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.11e-75myb domain protein 15